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As Mr.
Tappin rose from behind the defense table, he grabbed the material being handed to him. He
started to walk toward Dr. Yardley, stopped and retraced his steps.
He leaned
over and whispered something in the ear of his colleague. When he received an affirmative
response, he straightened up.
On his way
back to the area near the witness stand, he was busy inspecting the new batch of material.
He continued to do so for a further ten or fifteen seconds after stopping in front of the
witness stand.
Finally, he
said: "In your direct examination testimony you referred to an experiment by Fox in
which urea [CO (NH2)2] and malic acid (C4H6O5)
were heated to 150 degrees Celsius under conditions free from water - that is, which were
anhydrous in nature. You indicated this experiment resulted in the synthesis of aspartic
acid.
"In a
further experiment, also performed by Fox, you talked about a recipe for generating
polymers or bonded chains of amino acid. In this recipe, if one cooked the amino acid
glutamic acid in an oil bath for one hour at 170 degrees Celsius, and then blended in a
variety of other amino acids and cooked the whole mixture for a further three hours at the
same 170 degrees Celsius, then one could produce a chain of amino acids consisting of up
to a hundred units.
"In
variations on this experiment, phosphoric acid was added, and the variables of time and
temperature were played around with during different runs of the same experiment. This
resulted in an increase in the amounts of neutral and basic amino acids which could be
incorporated into the polymer chain of amino acids.
"You
also described another experiment in which sunlight was passed through a solution of
paraformaldehyde (CH2O)3, ammonia and ferric chloride. After a
certain amount of time, this arrangement brought about the synthesis of the amino acids
serine and asparagine.
"During
direct examination testimony, you talked, as well, about an experiment by Oro in which
hydrogen cyanide, ammonia and water were combined to produce, over a period of time, a
number of different amino acids. In addition, a certain amount of the purine, nucleic
base, adenine, showed up as a product in this experiment.
"You
also discussed how when the foregoing set-up was altered somewhat, other kinds of
molecules could be synthesized. For instance, if one combined cyanogen (C2N2)
and cyanoacetylene (HC3N) with hydrogen cyanide (HCN), then one could obtain
other nucleic bases such as uracil, cytosine, guanine and thymine.
"Finally,
in another experiment performed by Oro, you outlined, first, how he took some fatty acids,
one of the fundamental building blocks of many important lipids, and, then, how he dried
these fatty acids in the presence of phosphate and glycerol. In this manner, simple
phospholipids, which are fundamental components of membranes in living organisms, were
synthesized.
"I must
admit," Mr. Tappin indicated, "on the one hand, I find all of this experimental
ingenuity quite impressive. On the other hand, I also find such ingenuity potentially
troublesome.
"More
specifically, Dr. Yardley, different ingredients are taken from here and there and mixed
together in certain ways, for particular lengths of time, under specified conditions of
temperature, acidity, and so on. In other words, Professor, the requirements for these
experiments are all different from one another, involving, and depending on, different
conditions, reactants and treatments.
"Presumably,
these experiments are intended to simulate prebiotic conditions and demonstrate how purely
natural processes could lead to the synthesis of organic compounds that have potentially
important implications for origin-of-life issues. However, just as was true in Miller's
original origin-of-life, I'm having trouble understanding how these experiments simulate
actual prebiotic conditions and processes.
"For
example, Dr. Yardley, do we have any way of telling how prevalent such materials as urea,
malic acid, paraformaldehyde, ferric chloride, cyanoacetylene, cyanogen, fatty acids,
phosphate, and glycerol would have been in the Archean era?"
"We
believe," answered the professor, "that most of the compounds you listed would
have been available, some more so than others, during the Archean era. Most of these
compounds are extremely simple in structural formula, and we believe they would have been
formed relatively easily through natural chemical processes going on during that period of
time."
"Dr.
Yardley, correct me if I am wrong, but fatty acids are hardly simple hydrocarbons."
Referring to the sheets in his hand, he added: "Let's see ... palmitic acid, which is
one of the most abundant saturated fatty acids, has a formula of CH3(CH2)14COOH.
Oleic acid, which is one of the most common unsaturated fatty acids, has a formula of CH3(CH2)7CH:CH(CH2)7
- COOH."
"Wouldn't
you agree, Professor, that oleic acid and palmitic acid have considerably more complexity
than hydrogen cyanide (HCN), ammonia (NH3) and methane (CH4)?"
"Yes,"
Dr. Yardley acknowledged.
"I
believe," suggested the defense counsel, "that in your direct examination
testimony you said the Fischer-Tropsch reaction was involved in bringing about some of the
steps necessary for the formation of fatty acids. Is my recall on this matter accurate,
Dr. Yardley?"
"Yes,
it is," stated the professor.
"Would
you please review, once more, for the members of the jury, Professor, the general nature
of the Fischer-Tropsch process," requested Mr. Tappin.
"One
takes a gaseous form of carbon, like carbon monoxide (CO)," the professor explained,
"together with water vapor, and, then, one passes these over a hot iron-powder
catalyst, at temperatures between 180 and 300 degrees Celsius and under anywhere from one
to fifty atmospheres of pressure."
"Will
one have fatty acids at the end of this process?" asked the lawyer.
"No,"
replied the professor. "After the foregoing procedure has been run, one must find a
way to oxidize the hydrocarbon chains which have been generated by means of the
Fischer-Tropsch mechanism."
"In
your opinion, Dr. Yardley," asked the defense counsel, "how likely would a
naturally occurring counterpart to the Fischer-Tropsch reaction be?"
"The
fairest thing I can say," the professor suggested, "is that a naturally
occurring counterpart to the Fischer-Tropsch reaction is extremely unlikely but not
entirely inconceivable. When one adds to this the requirement of a further oxidation step,
one is really pushing the envelope of credibility to the outer limits."
"In the
Oro experiment mentioned earlier," indicated the lawyer, "from which
phospholipids were synthesized, two further ingredients were needed in addition to fatty
acids - namely, glycerol and phosphate. How available were these molecules likely to have
been in prebiotic times?"
"This
is hard to say. The structural formula for glycerol is C3H8O3
and is normally formed from the decomposition of natural fats by means of an alkali
compound or superheated steam.
"There
may have been some series of natural chemical reactions during prebiotic times which was
capable of synthesizing glycerol. The structural character of this compound is not so
complex that the act of assuming the existence of such a hydrocarbon during the Archean
era strains credibility.
"A
phosphate, on the other hand, is produced by combining an alcohol group with any one of
three phosphoric acids. For instance, orthophosphoric acid, which is quite stable, has the
formula H3PO4.
"Phosphorus,
one of the main ingredients of phosphates and phosphoric acids, is a fairly rare
non-metallic element. Even at the best of times, there are only trace amounts of
phosphorus to be found in seawater, and the presence of phosphorus in the Earth's crust is
quite limited relative to elements such as magnesium, iron, calcium, potassium, sodium and
silicon.
"Phosphates
are very rare in nature, although human beings are quite adept at dumping huge quantities
of these compounds into the environment. However, as far as prebiotic times are concerned,
there would be no obvious, plentiful source of phosphates, and, therefore, phosphates
would not have been readily available to support, in a rigorous fashion, any reaction
requiring them during the Archean era.
"This
does not mean there were no phosphates in prebiotic times. It merely means their relative
scarcity would have placed constraints on where, when and how frequently
phosphate-dependent reactions could have proceeded."
"Dr.
Yardley, could one fairly say," inquired the lawyer, "that the plausible
likelihood of not only producing, but, as well, bringing together, fatty acids, glycerol
and phosphates in order to synthesize phospholipid compounds under prebiotic, Archean era
conditions is seriously in question?"
"Yes,"
the professor agreed, "I think one would not be unfair if one were to characterize
the situation in this fashion. This doesn't necessarily mean the whole thing is completely
impossible, but at this point in time, in the light of what is known, many researchers
can't imagine any series of plausible steps during prebiotic times which, A, would have
led to the formation of the individual reactants involved in phospholipid synthesis, or,
B, would have resulted in these ingredients coming together to make such a reaction
possible."
"Therefore,"
reasoned the defense counsel, "to call Oro's phospholipid synthesis experiment a
simulation which accurately reflects what went on under the Archean era's prebiotic
conditions is really, potentially, quite misleading. Would you agree with this, Dr.
Yardley?"
"Let's
just say," the professor offered, "the indicated potential to be misleading is
present, and one cannot treat the natural, prebiotic synthesis of glycerol, phosphates,
fatty acids or phospholipids as foregone conclusions. At best, the issue lends itself to
being highly contentious and argumentative."
"Dr.
Yardley, let's return to the Fox polymerization experiment for a moment," Mr. Tappin
suggested. "A recipe was used in that experiment which called for a variety of amino
acids to be thrown into a mixing bowl of sorts. Subsequently, these ingredients were
heated for some 3-4 hours in an oil bath at 170 degrees Celsius.
"In
your direct examination testimony, Professor, you indicated many researchers believe the
exposed surface of a sandy beach, or a mineral bed, or a strip of solidified lava, where
temperatures may have reached up to 100 degrees Celsius, might have served as a crucible
for certain condensation reactions during the Archean era. In another portion of your
testimony, you spoke about hydrothermal vents in which the temperatures were in the
vicinity of 350 degrees Celsius, but these took place under water, not in oil.
"You
didn't specifically speak about the conditions around volcanoes in your testimony,
Professor. Yet, since neither of the previously-mentioned possibilities really matches the
required conditions of the Fox experiment, can one assume that, perhaps, the area in and
around certain volcanoes is the only other candidate which, conceivably, might fit into
the kind of scenario which Fox's protenoid experiment is purporting to simulate?"
"Volcanic
areas," the professor said, "seem to be the only possibility which comes readily
to mind."
"Would
you agree, Dr. Yardley," inquired the lawyer, "that finding a place in volcanic
areas that provided an oil bath of precisely 170 degrees Celsius for just 3-4 hours would
be ...let's be kind here ... a tricky project?"
"Yes,"
responded the professor, "I guess one might not find many places capable of meeting
these precise conditions, but this is not the same thing as saying that these sort of
conditions couldn't, or didn't, exist."
"Professor
Yardley, in your testimony concerning the Fox experiment, you mentioned, I believe,"
recalled the defense counsel, "that not all of the bonds which linked together the
amino acid monomers or units were peptide in character - that only some of these bonds
were peptide in character. Is this correct?"
"Yes,"
the professor replied.
"In
living organisms on Earth, peptide bonds," the lawyer stipulated, "occur between
the amino and carboxyl groups of neighboring amino acids, binding them together to form
proteins. Isn't this so, Dr. Yardley?"
"That's
right," the professor confirmed.
"Therefore,"
concluded the defense counsel, "the amino acid polymers or chains in Fox's experiment
are not really proteins because they are not what we find in living organisms. Presumably,
for precisely this reason, the polymers in Fox's experiment are called protenoids and not
proteins. Is this a fair way of putting things, Dr. Yardley?"
"I
guess so," admitted the professor.
"Did
any of these protenoids exhibit substantial enzymatic characteristics?" inquired Mr.
Tappin.
"Not
really," the professor stated. "On the other hand, there might not be anything
which prevents protenoids from playing the other major role of proteins involving the
morphology or form and structure of organisms.
"Conceivably,
a variety of ribozymes - that is, polymers of RNA with enzymatic properties - may have
served as the early enzymes of the protocell. Protenoids could have filled the function of
helping to give form to these protocells or to various organelles, such as ribosomes or
mitochondria, within the protocell."
"Is it
not the case, Dr. Yardley," queried the lawyer, "that the bonds, whether peptide
or otherwise, formed during condensation reactions, in which water is removed from
neighboring monomeric amino acids and, therefore, which are called anhydride bonds ...
isn't it the case these anhydride bonds are quite labile and, relatively speaking, easily
broken."
"Yes,
under certain conditions, this is true," the professor acknowledged.
"Would
you agree, Dr. Yardley," asked Mr. Tappin, "that volcanic areas in which
temperatures are 170 degrees Celsius, or higher, for prolonged periods of time, might be
considered to have met the requirements alluded to by you through your use of the
qualification: "under certain conditions", with respect to the labile nature of
peptide bonds among amino acids?"
"Yes,"
admitted the professor.
"Are we
not encountering here," wondered the lawyer, "yet another instance in which,
under certain conditions, energy may be coupled to chemical reactants for short periods
and in specific ways, to forge more complex arrangements of hydrocarbons, but when, under
other circumstances, these same forms of energy can quickly turn the tables on the
products of such reactions and, as a result, undo what these energy forms previously had
helped to bring about?"
"Yes,
this is a possibility," the professor agreed.
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